Genomic and biotechnological interventions for enhanced utilization of date palm (Phoenix dactylifera L.) germplasm
Keywords:
Arid zone, biotechnology,, Date palm, germplasm, genomicAbstract
Date palm (Phoenix dactylifera L.) belongs to Arecaceae family and considered as the oldest domesticated plant on the globe. Genetically, date palm is strict dioecious evergreen tree which is being cultivated in arid and semi arid regions of the world as an important fruit tree, for providing staple food across the world. Nutritionally, the fruits of date palm are rich sources of vitamins, minerals and carbohydrates which also posses medicinal values. On the other hand, date palm is capable of surviving for longer periods even at extremely adverse environmental conditions with prolonged life span, which admires about its complex genetic makeup. In this context, date palm has tremendous scope to conduct the fundamental and scientific research for bio- prospecting of the stress tolerant genes, understanding the tolerance mechanism and their interactions with natural ecosystem. Furthermore, the developed genomic resources and biotechnological interventions so far in date palm could be useful to enhanced utilization of date palm germplasm for further crop improvement programme. However, to conduct a high through put research on improvement of date palm, it still needs more emphasis on genomic and biotechnological interventions for crop improvement. Therefore, a comprehensive report has been made to collect the information available on genomic and biotechnology in date palm carried out so far and their futuristic approach for improvement in date palm cultivation.
Downloads
References
Abdallah, A.B., Sitti, K., Leporive, P. and Du Jardin, P. 2000.
Identification de cultivars de palmier dattier (Phoenix dactylifera L.) par l'amplification aleatoire d'AND (RAPD). Cahiers Agricultures, 9:103107. Al-Ameri, A.A., Al-Qurainy, F., Gaafar, A.Z., Khan, S.and Nadeem, M. 2016. Molecular identification of sex in Phoenix dactylifera L. using inter simple sequence repeat markers. Biomed Research International, 2016:15.
Ageez, A. and Madboly, E.A. 2011. Identification of male specific molecular markers in date palm sewi cultivar. Egyptian Journal of Genetics And Cytology, 40:201-214.
Al-Dous, E.K., George, B., Al-Mahmoud, M.E., Al-Jaber, M.Y., Wang, H., Salameh, Y.M., Al-Azwani, E.K., Chaluvadi, S., Pontaroli, A.C., De Barry, J., Arondel, V., Ohlrogge, J., Saie, I.J., Suliman-Elmeer, K., Bennetzen, J.L., Kruegger, R.R. and Malek, J.A. 2011. De novo genome sequencing and comparative genomics of date palm (Phoenix dactylifera). Nature Biotechnology, 29:521527. Al-Faifi, S.A., Migdadi, H.M., Algamdi, S.S., Khan, M.A., Al-Obeed, R.S., Ammar, M.H. and Jakse, J. 2017. Analysis of expressed sequence tags (EST) in Date Palm. In: Al-Khayri, J., Jain, S., Johnson, D. (eds) Date Palm Biotechnology Protocols Volume II. Methods in Molecular Biology, Vol 1638. Humana Press, NY.
Al-Faifi, S.A., Migdadi, H.M., Algamdi, S.S., Khan, M.A., Al-Obeed, R.S., Ammar, M.H. and Jakse, J. 2017. Development of Genomic Simple Sequence Repeats
(SSR) by Enrichment Libraries in Date Palm. In: Al- Khayri J, Jain S, Johnson D (eds) Date Palm Biotechnology Protocols Volume II. Methods in Molecular Biology, Vol 1638 Humana Press, NY. Alhaider, I.A., Mohamed, M.E., Ahmed, K.K.M. and Kumar, A.H.S. 2017. Date Palm (Phoenix dactylifera) Fruits as a Potential Cardioprotective Agent. The Role of circulating progenitor Cells. Frontiers in pharmacology, 8:592.
Al-Khalifah, N.S. and Shanavaskhan, A.E. 2017. Molecular Identification of date palm cultivars using random amplified polymorphic DNA (RAPD) Markers. In: Al-Khayri J, Jain S, Johnson D (eds). Date palm Biotechnology Protocols Volume II. Methods in Molecular Biology, Vol 1638. Humana Press, NY. Al-Khayri, J.M., Jain, S.M. and Johnson, D.V. 2015. Preface. In: Al-Khayri JM, Jain S M, Johnson DV (eds) Date palm genetic resources and utilization. Springer, Dordrecht pp. 5-6.
Allam, M.A. and Saker, M.M. 2017. Microprojectile bombardment transformation of date palm using the insecticidal cholesterol oxidase (ChoA) Gene. In: Al- Khayri J, Jain S, Johnson D (eds). Date palm Biotechnology Protocols Volume I. Methods in Molecular Biology, Vol 1637. Humana Press, NY. Al-Qurainy, F., Khan, S., Nadeem, M., Tarroum, M. and Gaafar, A-R. Z. 2017. Antioxidant system response and cDNA-SCoT marker profiling in Phoenix dactylifera L. Plant under Salinity Stress. International Journal of Genomics, 2017:1537538. Andersen, J.B. and Lubberstedt, T. 2008. Functional markers in plants. Trends in Plant Science, 8:554560. Aslam, J., Khan, S.A. and Azad, M.A.K. 2015.
Agrobacterium-mediated genetic transformation of Date Palm (Phoenix dactylifera L.) cultivar "Khalasah" via somatic embryogenesis. Plant Science Today, 2:93-101.
Atia, M.A.M., Adawy, S.S. and El-Itriby, H.A. 2017. Date Palm sex differentiation based on Fluorescence In Situ Hybridization (FISH). Methods in Molecular Biology, 1638:245-256.
Awan, F.S., Maryam, Jaskani M.J. and Sadia, B, (2017). Gender identification in Date Palm using molecular markers. In: Al-Khayri, J., Jain, S., Johnson, D. (eds) Date Palm Biotechnology Protocols Volume II. Methods in Molecular Biology, Vol 1638. Humana Press, NY.
Chen, C.X., Bowman, K.D., Choi, Y.A., Dang, P.M., Rao, M.N., Huang, S., Soneji, J.R., McCollum, G. and Gmitter, F.G.J.R. 2008. EST-SSR genetic maps for Citrus sinensis and Poncirus trifoliate. Tree Genetics and Genomes, 4:110.
Dhawan, C., Kharb, P., Sharma, R., Uppal, S. and Aggarwal, R.K. 2013. Development of male-specific SCAR marker in Date Palm (Phoenix dactylifera L.). Tree Genetics and Genomes, 9:11431150. Durand, J., Bodénès, C., Chancerel, E., Frigerio, J.M., Vendramin, G., Sebastiani, F., Buonamici, A.,
Gailing, O., Koelewijn, H.P., Villani, F., Mattioni, C., Cherubini, M., Goicoechea, P.G., Herrán, A., Ikaran, Z., Cabané, C., Ueno, S., Alberto, F., Dumoulin, P.Y., Guichoux, E., de Daruvar, A., Kremer, A. and Plomion, C. 2010. A fast and costeffective approach to develop and map EST-SSR markers: oak as a case study. BMC Genomics, 11:570.
El Hadrami, A. and Al-Khayri, J.M. 2012. Socioeconomic and traditional importance of date palm. Emirates Journal of Food and Agriculture, 24:371385.
El Hadrami, A., Daayf, F., Elshibli, S., Jain, S.M. and El Hadrami, I. 2011. Somaclonal Variation in Date Palm. In: Jain, S.M. (eds.), Date Palm biotechnology, pp183-203, Springer. EL-Din Solliman, M., Mohasseb, H.A.A, Al-Khateeb, A.A., Al-Khateeb, S.A., Chowdhury, K., El-Shemy, H.A. and Aldaej, M.I. 2017. Identification and sequencing of Date-SRY Gene: A novel tool for sex determination of date palm (Phoenixdactylifera L.). Saudi Journal of Biological Sciences, (In press). Fang, Y., Wu, H., Zhang, T., Yang, M., Yin, Y., Pan, L., Yu, X., Zhang, X., Hu, S., Al-Mssallem, I.S. and Yu, J. 2012. A complete sequence and transcriptomic analyses of Date Palm (phoenix dactylifera 1.) mitochondrial genome. PLoS ONE, 7:e37164.
FAOSTAT, 2017. http://www.fao.org/faostat/ Giovino, A., Bertolini, E., Fileccia, V., Al Hassan, M., Labra,
M. and Martinelli, F. 2015. Transcriptome analysis of Phoenix canariensis Chabaud in response to Rhynchophorus ferrugineus Olivier attacks. Frontiers in Plant Science, 6:817.
Hamwich, A., Farah, J., Moussally, S., Al-Shamaa, K., Almer, K., Khierallah, H., Udupa, S., Lababidi, S., Malek, J., Aaouine, M. and Baum, M. 2010. Development of 1000 microsatellite markers across the date palm (Phoenix dactylifera L.) genome. Acta Horticulturae, 882:269277. Hassan, L. 2013. Successful genetic transformation in date palm (Phoenix dactylifera L.). Journal of the Bangladesh Agricultural University, 11:171176. Hazzouri, K.M., Flowers, J.M., Visser, H.J., Khierallah, H.S., Rosas, U., Pham, G.M., Meyer, R.S., Johansen, C.K., Fresquez, Z.A., Masmoudi, K., Haider, N., El Kadri, N., Idaghdour, Y., Malek, J.A., Thirkhill, D., Markhand, G.S., Krueger, R.R., Zaid, A. and Purugganan, M.D. 2015. Whole genome re- sequencing of Date Palms yields insights into diversification of a fruit tree crop. Nature Communications, 6:8824.
Al-Mssallem, I.S., Hu, S., Zhang, X., Lin, Q., Liu, W., Tan, J., Yu, X., Liu, J., Pan, L., Zhang, T., Yin, Y., Xin, C., Wu, H., Zhang, G., Abdullah, M.M.B., Huang, D., Fang, Y., Alnakhli, Y.O., Jia, S., Yin, A., Alhuzimi, E.M., Alsaihati, B.A., Al-Owayyed, S.A., Zhao, D., Zhang, S., Al-Otaibi, N.A., Sun, G., Majrashi, M.A., Li, F., Tala, Wang, J., Yun, Q., Alnassar, N.A., Wang, L., Yang, M., Al-Jelaify, R.F., Liu, K., Gao, S., Chen, K., Alkhaldi, S.R., Liu, G., Zhang, M., Guo, H. and
Yu, J. 2013. Genome sequence of the Date Palm Phoenix dactylifera L. Nature Communications, 4:2274.
Jain, S.M. 2012. Date palm biotechnology: current status and prospective-an overview. Emirates Journal of Food and Agriculture, 24:386399.
Kharb, P. and Mitra, C. 2017. Early sex identification in Date Palm by male-specific sequence-characterized amplified region (SCAR) markers. In: Al-Khayri J, Jain S, Johnson D (eds) Date Palm biotechnology protocols Vol II. Methods in Molecular Biology, Vol 1638 Humana Press, NY.
Palliyarakkal, M.K., Ramaswamy, M. and Vadivel, A. 2011. Microsatellites in palm (Arecaceae) sequences.
Bioinformation, 7:347.
Mahmoudi, H., Hosseininia, G., Azadi, H. and Fatemi, M. 2008. Enhancing date palm processing, marketing and pest control through organic culture. Journal of Organic Systems, 3:2939.
Maryam, M.J.J., Awan, F.S., Ahmad, S. and Khan, I.A. 2016. Development of molecular method for sex identification in date palm (Phoenix dactylifera L.) plantlets using novel sex-linked microsatellite markers. 3 Biotech., 6:22.
Mokhtar, M.M., Adawy, S.S., El-Assal, S.E.D.S. and Hussein, E.H.A. 2016. Genic and intergenic SSR database generation, SNPs determination and pathway annotations, in date palm (Phoenix dactylifera L.). PLOS ONE, 11:e0159268.
Mousavi, M., Mousavi, A., Habashi, A.A. and Dehsara, B. 2014. Genetic transformation of date palm (Phoenix dactylifera L. cv. 'Estamaran') via particle bombardment. Molecular Biology Reports, 41:81858194.
Nixon, R.W. (1951). The date palm-"Tree of Life" in the
subtropical deserts. Economic Botany, 5:274301. Qi, X.L., Cui, F., Li, Y., Ding, A.M., Li, J., Chen, G.L. and Wang, H.G. 2010. Molecular tagging wheat powdery mildew resistance gene pm21 by EST-SSR and STS markers. Molecular Plant Breeding, 1: 10.5376/mpb.2010.01.0004.
Radwan, O., Arro, J., Keller, C. and Korban, S. 2015. RNA- Seq transcriptome analysis in date palm suggests multi-dimensional responses to salinity stress. Tropical Plant Biology, 8:7486.
Ramchiary, N., Nguyen, V.D., Li, X.N., Hong, C.P., Dhandapani, V., Choi, S.R., Yu, G., Piao, Z.Y. and Lim, Y.P. 2011. Genic microsatellite markers in Brassica rapa: development, characterization, mapping, and their utility in other cultivated and wild Brassica ralatives. DNA Research, 18: 305320.
Saker, M.M. 2011. Transgenic date palm. In: Jain, S.M., Al- Khayri, J.M., Johnson, D.V. (eds) Date Palm biotechnology. Springer, Dordrecht, pp 631650. Saker, M., Ghareeb, H. and Kumlehn, J. 2009. Factors
influencing transient expression of Agrobacterium mediated transformation of GUS gene in embryogenic callus of date palm. Advances in
Horticultural Science, 23:150-157.
Siljak-Yakovlev, S., Cerbah, M., Sarr, A., Benmalek, S., Bounaga, N., Coba de la Pena, T. and Brown, S.C. (1996). Chromosomal sex determination and heterochromatin structure in date palm. Sexual Plant Reproduction, 9:127132.
Solliman, M.E.D.M., Mohasseb, H.A., Al-Khateeb, A.A., Al- Khayri, J.M. and Al-Khateeb, S.A. 2017. Transient GUS gene expression in Date Palm fruit using Agroinjection transformation technique. In: Al- Khayri, J., Jain, S., Johnson, D. (eds) Date Palm biotechnology protocols volume I. Methods in molecular biology, Vol 1637. Humana Press, NY. Sun, G. 2012. Micro RNAs and their diverse functions in
plants. Plant Molecular Biology, 80:1736. Trifi, M., Rhouma, A. and Marrakchi, M. 2000. Phylogenetic relationships in Tunisian date-palms (Phoenix dactylifera L.) germplasm collection using DNA amplification fingerprinting. Agronomie, 20:665671.
Varshney, R.K., Graner, A. and Sorrells, M.E. 2005. Genic microsatellite markers in plants: features and applications. Trends in Biotechnology, 23:4855. Wrigley, G. 1995. Date palm, In: J. Smartt and N.W. Simmonds (eds.). Evolution of crop plants. 2nd ed. Longman Group, Essex, UK pp. 399403. Xiao, Y., Xia, W., Yang, Y., Mason, A.S., Lei, X. and Ma, Z. 2013. Characterization and evolution of conserved microRNA through duplication events in Date Palm (Phoenix dactylifera). PLoS ONE, 8:e71435. Xin, C., Liu, W., Lin, Q., Zhang, X., Cui, P., Li, F., Zhang, G., Pan, L., Al-Amer, A., Mei, H., Al-Mssallem, I.S., Hu, S., Al-Johi, H.A and Yu, J. 2015. Profiling microRNA expression during multi-staged date palm (Phoenix
dactylifera L.) fruit development. Genomics, 105:242251.
Yaish, M.W. and Kumar, P.P. 2015. Salt tolerance research in Date Palm tree (Phoenix dactylifera L.), past, present and future perspectives. Frontiers in Plant Science, 6:348.
Yaish, M.W., Antony, I. and Glick, B.R. 2015. Isolation and characterization of endophytic plant growth- promoting bacteria from Date Palm tree (Phoenix dactylifera L.) and their potential role in salinity tolerance. Antonie Van Leeuwenhoek, 107:1519- 1532.
Yaish, M.W., Patankar, H.V., Assaha, D.V.M., Zheng, Y., Al- Yahyai, R. and Sunkar, R. 2017. Genome-wide expression profiling in leaves and roots of Date Palm (Phoenix dactylifera L.) exposed to salinity. BMC Genomics, 18:246.
Yaish, M.W., Sunkar, R., Zheng, Y., Ji, B., Al-Yahyai, R. and Farooq, S.A. 2015. A genome-wide identification of the miRNAome in response to salinity stress in Date Palm (Phoenix dactylifera L.). Frontiers in Plant Science, 6:946.
Yang, M., Zhang, X., Liu, G., Yin, Y., Chen, K., Yun, Q., Zhao, D., Al-Mssallem1, I.S. and Yu, J. 2010. The complete chloroplast genome sequence of Date Palm (Phoenix dactylifera L.). PLoS ONE, 5:e12762. Zhang, J., Yang, W., Cui, X., Yu, H., Jin, H., Chen, Z. and Shen, T. 2011. Breeding strains of Panax notoginsent by using EST-SSR markers. Zhongquo Zhong Yao Za Zhi, 36:97101.
Zhao, Y., Williams, R., Prakash, C. and He, G. 2012.
Identification and characterization of gene-based SSR markers in Date Palm (Phoenix dactylifera L.). BMC Plant Biology, 12:237.
