Recent advances in geminivirus detection and future perspectives
DOI:
https://doi.org/10.48165/Keywords:
ELISA, Geminivirus, Polymerase chain reaction, Rolling circle amplification, microarray, , detectionAbstract
The detection and identification of viruses has been a challenge since the advent of the discipline of plant virology over a century ago. A great variety of methods have been developed that permit differentiation of viral pathogens. These methods, initially based solely on identifying the distinct biological characteristics of different viruses, were soon supplemented with methods based on light or electron microscopy and serology and subsequently by Enzyme Linked Immunosorbant Assay (ELISA) and finally the use of molecular (nucleic acid-based) techniques have revolutionized the diagnosis of plant viruses. While the technologies available to virologists have obviously become more diverse and improved, the challenges have also changed greatly. Detection of plant viruses is becoming more critical as globalization of trade, particularly in horticultural commodities increase. The potential effects of climate change have further aggravated the movement of viruses and their vectors, transforming the diagnostic landscape.
References
Al-Bitar, L., & Luisoni, E. (1995). Serological evaluation of an improved purification method for tomato yellow leaf curl geminivirus. EPPO Bulletin, 25, 269-276.
Atzmon, G., Vanoss, H., & Czosnek, H. (1998). PCR amplification of tomato yellow leaf curl (TYLCV) DNA from squash of plants and whitefly vectors: Application to the study of TYLCV acquisition and transmission. European Journal of Plant Pathology, 104(2), 189-194.
Boonham, N., Tomlinson, J., & Mumford, R. (2007). Microarrays for rapid identification of plant viruses. Annual Review of Phytopathology, 45, 307–328.
Boonham, N., Perez, L.G., Mendez, M.S., Peralta, E.L., Blockley, A., Walsh, K., Barker, I., & Mumford, R.A. (2004). Development of an RT-PCR assay for the detection of potato spindle tuber viroid. Journal of Virological Methods, 116, 139-146.
Briddon, R.W., & Markham, P.G. (1994). Universal primers for the PCR amplification of dicot-infecting geminiviruses. Molecular Biotechnology, 1, 202-205.
Briddon, R.W., Bull, S.E., Mansoor, S., Amin, I., & Markham, P.G. (2002). Universal primer for the PCR-mediated amplification of DNA-β: a molecule associated with the monopartite begomovirus. Molecular Biotechnology, 20, 315-318.
Briddon, R.W., Bull, S.E., Amin, I., Mansoor, S., Bedford, I.D., Rishi, N., Siwatch, S.S., Zafar, Y., Abdel-Salam, A.M., & Markham, P.G. (2004). Diversity of DNA-1: a satellite-like molecule associated with monopartite-DNA-β complexes. Virology, 324, 462-474.
Caciagli, P., & Bosco, D. (1997). Quantitation over time of tomato yellow leaf curl geminivirus DNA in its whitefly vector. Phytopathology, 87(6), 610-613.
Caciagli, P., Piles, V.M., Marian, D., Vecchiati, M., Masenga, V., Mason, G., Falcioni, T., & Noris, E. (2009). Virion stability is important for the circulative transmission of tomato yellow leaf curl Sardinia virus by Bemisia tabaci but virion access to salivary glands does not guarantee transmissibility. Virology, 83, 5784-5795.
David, W., Laurent, C., Zylberberg, M., Avila, P.C., Boushey, H., Cancino, M., Abouzid, A.M., Morales, F.J., Purcifull, D.E., Polston, J.E., & Hiebert, E. (1995). Generation and characterization of three monoclonal antibodies useful in detecting and distinguishing bean golden mosaic virus isolates. Phytopathology, 85, 484-490.
Dean, F.B., John, R., Nelson, T.L., & Giesler, T.L. (2001). Polymerase and multiply-primed rolling circle amplification of plasmid and phage DNA using phi29 DNA polymerase. Genome Research, 11, 1095-1099.
Devaraja, K., Gangatirkar, P., Sunitha, S.N., Narayanaswamy, K., Karande, A., Muniyappa, V., & Savithri, H.S. (2003). Production of monoclonal antibodies to tomato leaf curl Bangalore virus. Annals of Applied Biology, 144, 333-338.
Devaraja, Kirthi, N., Savithri, H.S., & Muniyappa, V. (2005). Purification of tomato leaf curl Bangalore virus and production of polyclonal antibodies. Current Science, 89(1), 181-183.
Dionne, N.S., Darren, P.M., Pierre, L., Adérito, L.M., Betty, E.O., Edward, P.R., & Arvind, V. (2008). A protocol for the rapid isolation of full geminivirus genomes from dried plant tissue. Journal of General Virology, 34, 475-483.
Dry, I.B., Rigden, J.E., Krake, L.R., Mullineaux, P.M., & Rezaian, M. (1993). Nucleotide sequence and genome organization of tomato leaf curl geminivirus. Journal of General Virology, 74, 147-151.
Duan, Y.P., Hiebert, E., Purcifull, D.E., & Powell, C.A. (1995). Use of digoxigenin-labelled probes for detection and host-range studies of tomato yellow leaf curl geminivirus. Phytopathology, 85, 1210.
Esteban, J.A., Salas, M., & Blanco, L. (1993). Fidelity of phi 29 DNA polymerase. Comparison between different polymerases. Current Science, 89(1), 181-183.
Chakraborty, S., Vanitharani, R., Chattopadhyay, B., & Fauquet, C.M. (2008). Supervirulent pseudorecombination and asymmetric synergism between genomic components of two distinct species of begomovirus associated with severe tomato leaf curl disease in India. Proceedings of the National Academy of Sciences USA, 99(24), 15687-15692.
Chakraborty, S., Singh, A.K., Kushwaha, N., & Chattopadhyay, B. (2009). Recent advances in geminivirus detection. In: National Symposium on Climate Change, Plant Protection, and Food Security Interface, BCKV, India, pp. 78.
Chattopadhyay, B., Singh, A.K., Yadav, T., Fauquet, C.M., Sarin, N.B., & Chakraborty, S. (2008). Infectivity of the cloned components of a begomovirus: DNA beta causing chilli leaf curl disease in India. Archives of Virology, 153(3), 533-539.
Clark, M.F., & Adams, A.N. (1977). Characteristics of the microplate method of enzyme-linked immunosorbent assay for the detection of plant viruses. Journal of General Virology, 34, 475-483.
Ganem, D., & DeRisi, J.L. (2002). Microarray-based detection and genotyping of viral pathogens. Proceedings of the National Academy of Sciences USA, 99(24), 15687-15692.
