Effect of temperature and ageing on recovery of DNA in forensic blood samples
DOI:
https://doi.org/10.48165/Keywords:
Forensic, DNA, Blood, Recovery, Time, TemperatureAbstract
Blood Samples were kept at different temperature for a period of 3 months to know the amount of quantitative DNA recovery from these samples in different conditions of temperature and ageing [Time]. The DNA isolation was done by standard phenol-chloroform method and optical density of the isolated DNA was measured by spectrophotometer. Recoverable DNA was found in all samples even after 3 months of study however the amount of DNA recovery decreased with time which is more marked in the initial phase followed by a slow and uniform decrease in DNA yield. Mean DNA yield at zero time at room temperature from fresh blood samples was found to be 1027± 361 μg/ml. Minimum and maximum yield was found to be 432.7 μg/ ml and 1655 μg/ml respectively.
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1. Andreasson H., Nilsson M., Budowle B., Lundberg H., Allen M. Nuclear and mitochondrial DNA quantification of various forensic materials. For Sci Int., 2006.
2. Anzai-Kanto E., Hirata M.H., Hirata R.D., Nunes F.D., Melani R.F., Oliveira R.N. DNA extraction from human saliva deposited on skin and its use in forensic identification procedures. Pesqui Odontol Bras 2005;19:216-222.
3. Avery O.T., Macleod, C.M., and McCarty M. Studies on the chemical nature of the substance inducing transformation of Pneumococcal types. J Exp Med, 1979 ;79:137-158 4. Benecke M. DNA typing in forensic medicine and in criminal investigations: a current survey. Naturwissenschaften 1997;84:181-188.
5. Benzinger E.A., Shirley R.E., Riech A.K., Sallee P.J., Boster K.L., Lumney K.C. Time course and inhibitors of Hae III digestion in the forensic laboratory. Appl Theor Electrophor 1995; 4:179-188.
6. Biesecker L.G., Bailey-Wilson J.E., Ballantyne J., Baum H., Bieber F.R., Brenner C., Budowle B., Butler J.M., Carmody G., Conneally P.M., Duceman B., Eisenberg A., Forman L., Kidd K.K., Leclair B., Niezgoda S., Parsons T.J., Pugh E., Shaler R., Sherry S.T., Sozer A., Walsh A. Epidemiology. DNA identifications after the 9/11 World Trade Center attack. Science 2005; 310:1122-1123.
7. Birren, B. and Lai, E. Pulse. Field Gel Electrophoresis: A Practical Guide. Academic Press, San Diego, CA, 1993.
8. Bomjen G., Raina A., Sulaiman I.M., Hasnain S.E., Dogra T.D. Effect of storage of blood samples on DNA yield, quality and fingerprinting: a forensic approach. Ind J Exp Biol. 1996; 34:384-386.
9. Bomjen G., Raina A., Sulaiman I. M., Hasnain S. E. & Dogra T.D. Effects of various storage of human tissues in DNA fingerprinting. J For. Med & Toxicol.1987; 3:1-6. 10. Bruce A. Roe, Judy S. C., Akbar S. K. Protocols For Recombinant DNA Isolation, Cloning and Sequencing, John Wiley & Sons, 1996.
11. Chaisomchit S., Wichajarn R., Chowpreecha S., Chareonsiriwatana W. A simple method for extraction and purification of genomic DNA from dried blood spots on filter paper. Southeast Asian J Trop Med Public Health 2003; 34: 641-645.
12. Circular of Information, Blood component information, Australian Red Cross blood services: 2005.
13. Cushwa W.T., Medrano J.F. Effects of blood storage time and temperature on DNA yield and quality. Biotechniques 1993; 14:204-207.
14. Dennis H., O’Rourke M., Geoffrey H., Shawn W. C. Ancient DNA Studies In Physical Anthropology. Ann Rev Anthropology 2000; 29: 217-242.
15. Evison M.P., Smillie D.M., Chamberlain A.T. Extraction of single-copy nuclear DNA from forensic specimens with a variety of postmortem histories. : J For Sci, 1997, 42:1032-1038. 16. Felsenfeld G., Davies D.R. and Rich A. Synthetic polynucleotides tend to form triple stranded nucleic acids spontaneously. J Am Chem Soc 1957; 79: 2023-2024.
17. Gialamas, D. and Stockwell, D. Forensic Biology Sample Collection and Handling Techniques: A Look at Methods Utilized by California Crime Labs, CAC News, Summer 1995. 18. Henle E.S. and Linn S. Structural modification of DNA due to environmental factors. J Bio Chem 1997; 272: 19097-19098.
19. Horsman K.M., Barker S.L., Ferrance J.P., Forrest K.A., Koen K.A., Landers J.P. Separation of sperm and epithelial cells in a microfabricated device: potential application to forensic analysis of sexual assault evidence. Anal Chem 2005, 77: 742-749.
20. Howard C., Eric S. A Trial Watcher’s Guide, GeneLex Press Seattle, Washington, 1994. 21. Jack G. C.; Biotechnology Theory and Techniques Vol II, Genetic Engineering Mutagenesis Separation Technology, Jones and Bartlett.
22. Jeffreys A.J., Wilson, V., & Thein, S.L. Hypervariable “minisatellite” regions in human DNA. Nature 1985a;314: 67-73
23. Jeffreys A.J., Wilson, V., & Thein, S.L. Individual specific “fingerprints” of human DNA Nature 1985b ;316: 76-79
24. Karen K. S., Karen C. S., Chin-Yih Ou, W. Harry H., Geraldine M. McQuillan, Eric J. S. DNA Banking in Epidemiologic Studies 1997;19:156-162.
25. Kido A., Hara M., Yamamoto Y., Kameyama H., Susukida R., Saito K., Takada A., Oya M. Nine short tandem repeat loci analysis in aged semen stains using the AmpFLSTR Profiler Kit and description of a new vWA variant allele; Leg Med (Tokyo) 2003;5: 93-96.
26. Kirby Lorne T., DNA Fingerprinting: AN introduction, M Stockkton press 1997. 27. Kobilinsky, L., Recovery and Stability of DNA in Samples of Forensic Science Significance. For Sci Rev 1992;4:67.
28. Lahiri D.K., Schnabel B., DNA isolation by a rapid method from human blood samples: effects of MgCl2, EDTA, storage time, and temperature on DNA yield and quality. Biochem Genet. 1993; 31:321-328.
29. Lan L., Zhang X., Duan B., Huo Z., Shi X. An evaluation of DNA fingerprinting with oligonucleotide probe for forensic purposes. Yi Chuan Xue Bao. 1993; 20:404-410. 30. Lee H.C., Ladd C., Bourke M.T., Pagliaro E., Tirnady F. []., DNA typing in forensic science. I. Theory and background. Am J For Med Pathol. 1994; 15(4):269-282.
31. Lewontin R.C. [1971; Ken-Ichi Kojima. September 17, 1930-November 14, 1971; Genetics. 1972; 71:Suppl 2:s89-90.
32. Li R.C., Harris H.A. Using hydrophilic adhesive tape for collection of evidence for forensic DNA analysis. J Forensic Sci 2003 ;48:1318-1321.
33. Lin Y., Zheng S.G., Lu X.Y., Que T.Z., Luo J.M., Xiao L., Research on DNA typing in the forensic identification of formalin-fixed paraffin embedded tissues. Fa Yi Xue Za Zhi 1999; 15:82-83, 127.
34. Linch C.A. et al. Evaluation of the human hair root for DNA typing subsequent to microscopic comparison. J For Sci 1998; 43, 305-314.
76 Indian Internet Journal of Forensic Medicine & Toxicology
35. Lu M., Guo Q. and Kallenbach N.R. Cruciform DNA, a widely found nucleic acid in eukaryotic genome. Crit Rev Biochem Mol 1992; 27: 157-190.
36. Madisen L, Hoar DI, Holroyd CD, Crisp M, Hodes ME. DNA banking: The effects of storage of blood and isolated DNA on the integrity of DNA. Am J Med Genet 1987; 27:379-390. 37. Maniatis, Sambrook and Fritsch Molecular Cloning, A Laboratory Manual [Cold Spring Harbor Laboratory Press, Plainview, NY], 2nd Ed., 1989.
38. McNally L., Shaler R.C., Baird M., Balazs I, De Forest P., Kobilinsky L. Evaluation of Deoxyribonucleic Acid (DNA) Isolated from Human Bloodstains Exposed to Ultraviolet Light, Heat, Humidity, and Soil Contamination. J For Sci1989; 34: 5.
39. Miller F.A., Ahern C., Smith C.A., Harvey E.A. [2005]; Understanding the new human genetics: A review of scientific editorials. Soc Sci Med. 2005, Dec 22.
40. Miller SA, Dykes DD, Polesky HF. A simple salting out procedure for extracting DNA from human nucleated cells. Nucleic Acids Res 1988; 16:1215.
41. Milman G., Chamberlain M., Langridge R. A. DNA: a form found at low humidity. Proc Natl Acad Sci 1967; 57: 1804-1808.
42. Misawa S. Application of DNA polymorphism to forensic medicine; Rinsho Byori 1994; 42:636-642.
43. Naslund K., Saetre P., von Salome J., Bergstrom T.F., Jareborg N., Jazin E. Genome-wide prediction of human VNTRs.Genomics 2005; 85:24-35.
44. Nederhand R.J., Droog S., Kluft C., Simoons M.L., de Maat M.P. Logistics and quality control for DNA sampling in large multicenter studies. J Thromb Haemost 2003; 1:987-991. 45. Patric J. Lincoln, Jim Thompsos, Forensic DNA Profiling Protocols, Human Press Totowa, New Jersey.
46. Pillay V.V. Textbook of Forensic Medicine and Toxicology. , 14nth Ed. Paras Publishers, Hyderabad; 2004
47. Polakova H., Kadasi L., Zelinkova M. The yield and quality of DNA extracted from blood samples stored under various conditions. Bratisl Lek Listy 1989; 90:844-847. 48. Potsch L., Meyer U., Rothschild S., Schneider P.M., Rittner C., Application of DNA techniques for identification using human dental pulp as a source of DNA. Int J Legal Med. 1992;105:139-143. 49. Prinz M., Staak M., Berghaus G. DNA extraction from bloodstains in respect to age and stained substrate. Acta Med Leg Soc (Liege) 1989; 39:213-220.
50. Raina A., Dogra T.D. Application of DNA fingerprinting in medicolegal practice. J Ind Med Assoc 2002;100: 688-694.
51. Raina A., Dogra T.D. Methods of Collection, Preservation and Forwarding of Biological material for DNA fingerprinting. J For Med Tox 2003;1:2.
52. Raina A., Pramanik P., Dogra T.D. Effect Of Storage Conditions Of Seminal Stains On Different Textures Of Cloths In Relation To DNA Yield; J For Med Tox 2005;3.
53. Rankin D.R., Narveson S.D., Birkby W.H., Lai J. Restriction fragment length polymorphism (RFLP) analysis on DNA from human compact bone. J For Sci 1996; 41:40-46. 54. Rao K.S. Spontaneous and environmental factors damaging DNA. Molecular Neurobiology 1993; 7: 23-48.
55. Ravard-Goulvestre C, Crainic K, Guillon F, Paraire F, Durigon M, de Mazancourt P Successful extraction of human genomic DNA from serum and its application to forensic identification; J Forensic Sci 2004; 49:60-63
56. Rich D., Nordheim A., Wang A.H.J., The chemistry and biology of left handed Z-DNA. Ann rev Biochem 1984; 53: 791-846.
57. Ross K.S., Haites N.E., Kelly K.F. Repeated freezing and thawing of peripheral blood and DNA in suspension: effects on DNA yield and integrity. J Med Genet 1990; 27:569-570.
Indian Internet Journal of Forensic Medicine & Toxicology 77
58. Ross K.S., Haites N.E., Kelly K.F. Repeated freezing and thawing of peripheral blood and DNA in suspension: effect on DNA yield and integrity. J Med Genet 1990; 27: 569-570. 59. Schmolck H., Buffalo E.A., Squire L.R. Memory distortions develop over time: recollections of the O.J. Simpson trial verdict after 15 and 32 months. Psychol Sci. 2000; 11:39-45. 60. Schneider P.M. Basic issues in forensic DNA typing. For Sci Int 1997; 88:17-22. 61. Schwartz T.R., Schwartz E.A., Mieszerski L., McNally L., Kobilinsky L., Characterization of Deoxyribonucleic Acid (DNA) Obtained from Teeth Subjected to Various Environmental Conditions. J For Sci 1995; 36.
62. Spencer M., Fullem W., Wilkins M.H.F., and Brown G.L. A form DNA, also found in non humid environment. Nature 1962; 194:1014.
63. Sweet D, Hildebrand D. Recovery of DNA from human teeth by cryogenic grinding. J For Sci 1998; 43:1199-1202.
64. Tibor Kalmár*, Csanád Z. Bachrati, Antónia Marcsik , István Raskó. A simple and efficient method for PCR amplifiable DNA extraction from ancient bones. Nucleic Acids Research 2000;28.
65. Walsh D.J., Corey A.C., Cotton R.W., Forman L., Herrin G.L., Word C.J. Garner D.D. Isolation of Deoxyribonucleic Acid (DNA) from Saliva and Forensic Science Samples Containing Saliva. J For Sci 1992: 37.
66. Wang A.H.J., Quigley G.J., Kolpak F.G. Crawford J.W., Van Boom J.H., Van der Marel G and Rich A. Nature 1979; 282: 680-686.
67. Waye J.S., Michaud D., Bowen J.H. Fourney R.M. Sensitive and specific quantification of human genomic deoxyribonucleic acid (DNA) in forensic science specimens: casework examples. J For Sci 1991; 36:1198-203.
68. Weir B.S. DNA statistics in the Simpson matter.Nat Genet 1995; 11:365-368. 69. Wilson DA and Thomas CA. Cruciform DNA: Is it widely found in eukaryotic cells. J Mol Biol 1974; 84, 115-144.
70. Wiseman H. and Halliwel B., Damage to DNA by reactive oxygen and nitrogen species. Bioche J 1996; 313: 17-27.