Genetic Variability Among Isolates Of Xanthomonas Citri Subsp. Citri Based On Rep-Pcr
DOI:
https://doi.org/10.48165/Keywords:
Canker, citrus, Xanthomonas, rep-PCRAbstract
Citrus canker caused by Xanthomonas citri subsp. citri is one of the most important disease of citrus in India. In the present study 23 isolates of Xanthomonas citri subsp. citri were collected from Varanasi and Jaunpur districts of Uttar Pradesh (India). Isolates showed similar biochemical characteristics whereas molecular analysis involving repetitive polymerase chain reaction [rep-PCR] (BOX-, ERIC- and REP-PCR) grouped these isolates into six clusters at 50% similarity coefficient, thereby revealing presence of variation in X. citri subsp. citri isolates.
Downloads
References
Aneja, K.R. 1996. Experiments in Microbiology, Plant pathology, Tissue Culture and Mushroom Cultivation. Wishwa Prakashan New Age International, New Delhi, India.
Broadbent, P., Fahy, P.C., Gillings, M.R., Bradley, J.K. and Barnes D. 1992. Asiatic citrus canker detected in a pummelo orchard in northern Australia. Plant Disease, 76: 824-829. Cubero, J. and Graham, J.H. 2002. Genetic relationship among worldwide strains of Xanthomonas causing canker in citrus species and design of new primers for their identification by PCR. Applied and Environmental Microbiology, 68:1257-1264.
Das, A.K. 2001. Bacterial diseases of citrus and their management. pp. 395-406. In: Citrus (eds. S. Singh and S.A.M.H. Naqvi), International Book Distributing Co., Lucknow, India. Dickey, R.S. and Kelman, A. 1988. Caratovora or soft rot group. pp. 81-84. In: Laboratory Guide for Identification of Plant Pathogenic Bacteria (2nd edn.) [ed. N.W. Schaad]. APS Press, St. Paul, Minnesota, USA.
Fahy, P.C. and Persley, G.J. 1983. Plant Bacterial Disease: A Diagnostic Guide. Academic Press, Syndey, Australia.
Gabriel, D.W. 1985. Four plasmid DNA variants distinguished in 1984 Florida citrus canker epiphytotic. Phytopathology, 75: 1320-1321.
Grahm, J.H. and Gottwald, T.R. 1991. Research perspective on eradication of citrus bacterial canker disease in Florida. Plant Disease, 75: 1193-1200.
Hartung, J.S. and Civerolo, E.L. 1989. Restriction fragment length polymorphism distinguish Xanthomonas campestris pv. citri. pp. 503-508. In: Proceedings of 7th International Conference of Plant Pathogenic Bacteria, Akademiai Kiado, Budapest, Hungary.
Jensen, B.D., Vicente, J.G., Manandhar, H. and Roberts, S.J. 2010. Occurrence and diversity of X. campestris pv. campestris in vegetable Brassica fields in Nepal. Plant Disease, 94: 298-305. Khalid, H., Khalid, N., Abdul, M., Ikram-ul-Haq, Feng, L., Kazim, A., Shahid, A., Farah, K., Abdul, G. and Ghulam, R. 2010. Molecular and biochemical characterization of Xanthomonas axonopodis pv. citri pathotypes. African Journal of Biotechnology, 9: 9092-9095.
Nitish Rattan Bhardwaj et al.
Khodakaramian, G., Rahimian, H., Mohamadi, M. and Alameh, A. 1999. Phenotypic features, host range and distribution of the strains Xanthomonas axonopodis including citrus canker in southern Iran. Iranian Journal of Plant Pathology, 35: 102-111.
Lee, Y.H., Lee, S., Lee, D.H., Yu, S.M., Heu, S., Hyum, J.W., Ra, D.S. and Park, E.W. 2008. Difference of physiochemical characteristics between citrus bacterial canker pathotypes and identification isolates with repetitive sequence PCRs. Plant Pathology Journal, 24: 423-432.
Lopez, R., Asensio, C. and Gilbertson, R.L. 2006. Phenotypic and genetic diversity in strains of common blight bacteria (Xanthomonas campestris pv. phaseoli and X. campestris pv. phaseoli var. fuscans) in a secondary center of diversity of the common bean host suggests multiple introduction events. Phytopathology, 96: 1204-1213.
Louws, F.J., Fulbright, D.W., Stephens, C.T. and de Bruijn, F.J. 1994. Specific genomic fingerprints of phytopathogenic Xanthomonas and Pseudomonas pathovars and strain generated with repetitive sequences and PCR. Applied and Environmental Microbiology, 60: 2286-2295.
Louws, F.J., Fulbright, D.W., Stephens, C.T. and de Bruijn, F.J. 1995. Differentiation of genomic structure by rep-PCR fingerprinting to rapidally classify Xanthomonas campestris pv. vesicatoria. Phytopathology, 85: 528-536.
Lupski, J.R. and Weinstock, G.M. 1992. Short, interspersed repetitive DNA sequences in prokaryotic genomes. Journal of Bacteriology, 174: 4525-4529.
Mohammadi, M., Mirzaaee, M.R. and Rahimian, H. 2001. Physiological and biochemical characteristics of Iranian strains of Xanthomonas axonopodis pv. citri, the causal agent of citrus bacterial canker disease. Journal of Phytopathology, 149: 65-75.
Pooler, M.R., Ritchie, D.F. and Hartung, J.H. 1996. Genetic relationships among strains of Xanthomonas fragariae based on random amplified polymorphic DNA PCR, repetitive extragenic palindromic PCR, and enterobacterial repetitive intergenic consensus PCR data and generation of multiplexed PCR primers useful for the identification of this
phytopathogen. Applied and Environmental Microbiology, 62: 3121-3127.
Rezaei, M.K., Masoud S.B. and Ali Alizadeh. 2012. Genetic diversity among Xanthomonas citri subsp. citri strains in Iran. Journal of Plant Protection Research, 52: 1-9.
Schaad, N.W. 1988. Initial identification of common genera. pp. 81-84. In: Laboratory Guide for Identification of Plant Pathogenic Bacteria (2nd edn.) [ed. N.W. Schaad]. APS, Press St. Paul, Minnesota, USA.
Singh, D., Dhar, S. and Yadava, D.K. 2011. Genetic and pathogenic variability of Indian strains of anthomonas campestris pv. campestris causing black rot disease in crucifers. Current Micro biology. 63: 551-560.
Singh, S. 2001. Citrus industry of India. pp. 3-41. In: Citrus (eds. S. Singh and S.A.M.H. Naqvi). International Book Distributing Co., Lucknow, India.
Stall, R.E. and Civerolo, E.L. 1991. Research relating to the recent outbreaks of citrus canker in Florida. Annual Review of Phytopathology, 29: 399-420.
Suryawanshi, M.A., More, A.R. and Baig, M.M.V. 2012. Genetic and pathological diversity among Xanthomonas axonopodis pv. citri strains causing citrus canker in Maharashtra, India. Journal of Pure and Applied Microbiology, 6: 1219-1226.
Trindade, L.C., Lima, M.F. and Ferreira, M.A.S.V. 2005. Molecular characterization of Brazilian strains of Xanthomonas campestris pv. viticola by rep-PCR fingerprinting. Fitopatoogia Brasiliera, 30: 46-54.
Vauterin, L., Yang, P., Hoste, B., Vancanneyt, M., Civerolo, E.L., Swings, J. and Kersters, K. 1991. Differentiation of Xanthomonas campestris pv. citri strains by sodium dodecyl sulfate-poly acrylamide gel electrophresis of proteins, fatty acid analysis, and DNA-DNA hybridization. International Journal of Systematic Bacteriology, 41: 535-542.
Vauterin, L., Hoste, B., Kersters, K. and Swings, J. 1995. Reclassification of Xanthomonas. International Journal of Systematic Bacteriology, 45: 472-489.
Genetic variability in Xanthomonas citri isolates 65
Verniere, C., Hartung, J.S., Pruvost, O., Civerolo, E.L., Alvarez, A.M., Maestri, P. and Luisetti, J. 1998. Characterization of phenotypically distinct strains of Xanthomonas axonopodis pv. citri from southwest Asia. European Journal of Plant Pathology, 104: 477-487.
Verniere, C., Devaux, M., Pruvost, O., Couteau, A. and Luisett, J. 1991. Studies on the biochemical and physiological variation among strains of Xanthomonas campestris pv. citri., the causal agent of citrus bacterial canker disease. Fruits, 46: 160-170.
Versalovic, J., Schneider, M., de Bruijn, F.J. and Lupski, J.R. 1994. Genomic fingerprinting of bacteria using repetitive sequence based PCR. Methods Molecular Cell Biology, 5: 25-40. Wilson, K. 1987. Preparation of genomic DNA from bacteria. pp. 2.4.1–2.4.5. In: Current Protocols in Molecular Biology (eds. F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.A. Smith, J.G. Seidman and K. Struhl). Wiley, New York, USA.