Analysis Of Genetic Diversity In Parents And Hybrids Of Populus Deltoides Bartr. Using Microsatellite Markers
DOI:
https://doi.org/10.48165/Keywords:
Genetic diversity, germplasm, hybrids, molecular markers, Populus deltoids, simple sequence repeatAbstract
Molecular markers have proved a valuable source for assessing plant genetic resources by improving our understanding on the distribution and extent of genetic variability present within and among the species. In this study, genetic diversity among and between 16 parents and 12 hybrids of Populus deltoides were analyzed by SSRs (simple sequence repeats). The 18 selected SSR primers yielded 51 polymorphic scorable bands with PIC value of 0.77. The effective multiplex ratio and marker index were 1.82 and 0.80, respectively. Genetic similarity among the collections varied from 0.39 to 0.88 when pooled data of parents and hybrids were analyzed through UPGMA. The analysis of combined data set with SSR, clustered hybrids on dendrogram based on their relationship with parents. Thus, high polymorphism obtained indicates that SSR markers have potential for identification and characterization of genetic variation within and among Populus species.
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Broeck, A.V., Storme, V. and Cottrell, J.E. 2004. Gene flow between cultivated poplars and native black poplar (Populus nigra L.): A case study along the river Meuse on the Dutch-Belgian border. Forest Ecology and Management, 197: 307-310.
Brundu, G., Lupi, R., Zapelli, I., Fossati, T., Patrignani, G., Camarda I, Sala F. and Castiglione S. 2008. The Origin of clonal diversity and structure of Populus alba in Sardinia: Evidence from nuclear and plastid microsatellite markers. Annals of Botany, 102: 997-1006.
Castiglione, S., Cicatelli, A. and Lupi, R. 2010. Genetic structure and introgression in riparian populations of Populus alba L. Plant Biosystems, 144: 656-668.
Chaturvedi, H C., Sharma, A K., Agha, B Q., Jain, M. and Sharma, M. 2004. Production of clonal trees of Populus deltoides through in vitro regeneration of shoots from leaf, stem and root explants and their field cultivation. Indian Journal of Biotechnology, 2: 203-208.
Doyle, J.J. and Doyle, J.J. 1987. A rapid DNA isolation procedure from small quantities of fresh leaf tissues. Phytochemical Bulletin, 19: 11-15.
FAO. 1979. Poplars and Willows in Wood Production and Landuse. FAO Forestry. Series No. 10, Food and Agriculture Organization, Rome, Italy.
Fossati, T., Patrignani, G., Zapelli, I., Sabatti, M., Sala, F. and Castiglione, S. 2010. Development of molecular markers to assess the level of introgression of Populus tremula into P. alba natural populations. Plant Breeding, 123: 382-385.
Fossati, T., Zapelli, I. and Bisoffi, S. 2005. Genetic relationships and clonal identity in a collection of commercially relevant poplar cultivars assessed by AFLP and SSR. Tree Genetics and Genomes, 1: 11-19.
Ganopoulos, J.V., Kazantzis, K., Chatzicharisis, J., Karayiannis, I. and Tsaftaris, A.S. 2011. Genetic diversity structure and fruit trait associations in Greek sweet cherry cultivars using microsatellite based (SSR/ISSR) and morphophysiological markers. Euphytica, 181: 237-251.
Gomez, A., Manzanera, J.A., Aguiriano, E., Grau, J.M. and Bueno, M.A. 2003. SSR markers for monitoring an in vitro core collection of Populus tremula. Silvae Genetica, 52: 224-229. Grewal, G.K., Gill, R.I.S., Dhillon, G.P.S. and Vikal, Y. 2013. Molecular characterization and
genetic diversity analysis of Populus deltoids Bartr. ex Marsh. Clones using SSR markers. Indian Journal of Biotechnology, 13: 388-397.
Kadam, S.K. 2002. Evaluation of Full-sib Progenies of Selected Clones of Poplar (Populus deltoids Bartr.) Ph.D. Thesis, Forest Research Institute, Dehradun, India.
Lexer, C., Buerkle, C.A., Joseph, J.A., Heinze, B. and Fay, M.F. 2007. Admixture in European Populus hybrid zones makes feasible the mapping of loci that contribute to reproductive isolation and trait differences. Heredity, 98: 74-84.
Samriti Sharma et al.
Lexer, C., Fay, M.F.J., Joseph, A., Nica, M.S. and Heinze, B. 2005. Barrier to gene flow between two ecologically divergent Populus species, P. alba (white poplar) and P. tremula (European aspen): The role of ecology and life history in gene introgression. Molecular Ecology, 14: 1045-1057.
Lexer, C., Joseph, J.A. and Loo, M.V. 2010. Genomic admixture analysis in European Populus spp. reveals unexpected patterns of reproductive isolation and mating. Genetics, 186: 699-712. Meyers, L.A. and Meyers, J.J.B. 2002. Fighting change with change: Adaptive variation in an uncertain world. Trends in Ecology and Evolution, 17: 551-557.
Peng, Y.H., Lu, Z.X., Chen, K., Luukkanen, O., Korpelainen, H. and Li, C.Y. 2005. Population genetic survey of Populus cathayana originating from Southeastern Qinghai-Tibetan Plateau of China based on SSR markers. Silvae Genetica, 54(3): 116-122.
Rohlf, F.J. 2000. NTSYS pc Numerical Taxonomy and Multivariate Analysis Version 2.0.h Applied Biostatics Inc., New York, USA.
Samriti, S. 2015. Studies on Genetic Diversity in Rubus ellipticus (Smith) Using Molecular Markers. M.Sc. Thesis. Dr Y.S. Parmar University of Horticulture and Forestry, Nauni, Solan, India. Sanz, D.M., Suter, L. and Joseph, J. 2011. Genetic analysis of post-mating reproductive barriers in hybridizing European Populus species. Heredity, 107: 478-486.
Sharma, N., Kaur, R. and Vaidya, E. 2016. Potential of RAPD and ISSR markers for assessing genetic diversity among Stevia rebaudiana Bertoni accessions. Indian Journal of Biotechnology, 15: 95-100.
Shen, D., Bo, W., Xu, F. and Wu, R. 2014.Genetic diversity and population structure of the Tibetan poplar (Populus szechuanica var. tibetica) along an altitude gradient. BMC Genetics, 15: 1-10. Singh, A., Singh, N.P., Husain, R. and Sengar, R.S. 2015. DNA fingerprinting based identification and classification of indica rice (Oryza sativa L.) to assess genetic diversity via ISSR & RAPD markers. The Ecoscan, 9: 1015-1021.
Smith, J.S., Chin, E.C., Shu, H., Smith, O.S., Wall, S.J., Senior, M.L., Mitchell, S.E., Kresovich, S. and Zeigle, J. 1997. An evaluation of the utility of SSR loci as molecular markers in maize (Zea mays L.): Comparisons with data from RFLPs and pedigree. Theoretical and Applied Genetics, 95: 163-173.
Smulders, M.J.M., Beringen, R. and Volosyanchuk, R. 2008. Natural hybridization between Populus nigra L. and P. x Canadensis Moench. hybrid offspring competes for niches along the Rhine river in the Netherlands. Tree Genetics & Genomes, 4: 663-675.
Smulders, M.J., Schoot, V.D., Arens, P. and Vosman, B. 2001. Trinucleotide repeat microsatellite markers for black poplar (Populus nigra L.). Molecular Ecology Notes, 1: 188-190. Taylor, G. 2002. Populus: Arabidopsis for forestry. Do we need a model tree? Annals of Botany, 90: 681-689.
Tuskan, G.A., Guntur, I.E., Yang, Z.K., Yin, T.M., Swell, M.M. and Difazio, S.P. 2004. Characterization of microsatellites revealed by genomic sequencing of Populus trichocarpa. Canadian Journal of Forest Research, 34: 85-93.
Varshney, R.K., Chabane, K., Hendre, P.S., Aggarwal, R.K. and Graner, A. 2007. Comparative assessment of EST-SSR, EST-SNP and AFLP markers for evaluation of genetic diversity and conservation of genetic resources using wild, cultivated and elite barleys. Plant Science, 173: 638-649.
Zhang, J.F., Wei, Z.Z., Li, D. and Li, B. 2009. Using SSR markers to study the mechanism of 2n pollen formation in Populus x euramericana (Dode) Guinier and P. x popularis. Annals of Forest Science, 66: 53-62
Zhu, Y., Chen, H., Fan, J., Wang, Y., Li, Y. and Chen, J. 2000. Genetic diversity and disease control in rice. Nature, 406: 718-722.