Prevalence, Molecular Characterization, and Antibiotic Resistance  Profiling of Poultry-Associated Salmonella Isolates from Four Distinct  Geographical Zones of West Bengal, India

Authors

  • Sharadindu Shil Department of Biotechnology, Brainware University, West Bengal, India
  • Shankari Prasad Datta Genomics Laboratory, CLART, West Bengal Livestock Development Corporation Limited (WBLDCL), Kalyani, Nadia, West Bengal, India
  • Ashish Khatua Genomics Laboratory, CLART, West Bengal Livestock Development Corporation Limited (WBLDCL), Kalyani, Nadia, West Bengal, India
  • Kasturi Mondal Genomics Laboratory, CLART, West Bengal Livestock Development Corporation Limited (WBLDCL), Kalyani, Nadia, West Bengal, India
  • Jayanta Chowdhury Genomics Laboratory, CLART, West Bengal Livestock Development Corporation Limited (WBLDCL), Kalyani, Nadia, West Bengal, India
  • Amar Krishna Das Genomics Laboratory, CLART, West Bengal Livestock Development Corporation Limited (WBLDCL), Kalyani, Nadia, West Bengal, India
  • Aditya Maity Department of Biotechnology, Brainware University, West Bengal, India
  • Shrijita Nath Kalyani Mahavidyalaya, Kalyani University, West Bengal, India
  • Anusuya Debnath Department of Biotechnology, Brainware University, West Bengal, India

DOI:

https://doi.org/10.48165/aabr.32026.3.2.03

Keywords:

Salmonella; antimicrobial resistance; gyrA QRDR; fluoroquinolone resistance; qnrS; sul1; biofilm; multidrug resistance; West Bengal; One Health

Abstract

Salmonella contamination of poultry is a critical food safety and antimicrobial  resistance (AMR) concern at the human–animal–environment interface. This  cross-sectional study investigated the prevalence, serovar distribution, multidrug  resistance (MDR) profiles, genotypic resistance determinants, and biofilm-forming  capacity from commercial slaughter poultry across four zones of West Bengal,  India. A total of 300 biological samples (faecal, caecal, meat; 25 per sample type  per zone) were collected from 20 slaughterhouses across Burdwan, Midnapore,  Nadia, and South 24 Parganas. Culture-based prevalence was 32.67% (98/300; 95%  CI: 27.6–38.2%); significant zone-wise heterogeneity was observed (χ² = 13.64,  df = 3, p = 0.003), with Nadia recording the highest prevalence (46.67%). No  significant sample-type effect was detected (p = 0.192), consistent with systemic  gut-to-carcass contamination. Of 98 culture-positive isolates, 37 were invA confirmed by PCR. Serovar distribution was: Salmonella Typhimurium (21.6%),  Salmonella Enteritidis (24.3%), and untypable (54.1%). Antibiotic susceptibility  testing revealed universal resistance to amoxicillin-clavulanate and doxycycline;  co-trimoxazole resistance was 86.5%, neomycin 75.7%, levofloxacin 43.2%, and  enrofloxacin 40.5%; MDR was present in 91.9% (34/37). Sanger sequencing of gyrA  QRDR from 20 field isolates confirmed Asp87Tyr (n = 1) and Ser83Leu (n = 2);  qnrS and sul1 were identified in 5 and 3 isolates, respectively. Biofilm formation  was present in 92% (strong 21.6%, moderate 51.4%, weak 16.2%; Kruskal–Wallis  p = 0.518). These findings reveal an alarming convergence of high Salmonella  prevalence, MDR, and WHO-critically important antimicrobial resistance in West  Bengal slaughter poultry, with direct implications for food safety and One Health  AMR surveillance.  

 

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Author Biography

  • Sharadindu Shil, Department of Biotechnology, Brainware University, West Bengal, India

    Genomics Laboratory, CLART, West Bengal Livestock Development Corporation Limited (WBLDCL), Kalyani, Nadia, West Bengal, India

     

References

Biswas, M., Biswas, S., Gupta, B., Mascellino, M. T., Rakshit, A., & Chakraborty, B. (2022). Changing paradigms in antibiotic resistance in Salmonella species with focus on fluoroquinolone resistance: A 5-year retrospective study of enteric fever in a tertiary care hospital in Kolkata, India. Antibiotics, 11(10), 1308. https://doi.org/10.3390/antibiotics11101308

Chen, W., Xu, Z., Li, C., Wang, C., Wang, M., Liang, J., & Wei, P. (2023). Investigation of biofilm formation and associated genes in multidrug-resistant Salmonella pullorum in China (2018–2022). Frontiers in Veterinary Science, 10, 1248584. https://doi.org/10.3389/fvets.2023.1248584

Clinical and Laboratory Standards Institute. (2023). Performance standards for antimicrobial susceptibility testing (33rd ed.; CLSI supplement M100). Clinical and Laboratory Standards Institute.

Cortez, A. L. L., Carvalho, A. C. F. B., Ikuno, A. A., Burger, K. P., & Vidal-Martins, A. M. C. (2006). Identification of Salmonella spp. isolates from chicken abattoirs by multiplex PCR. Research in Veterinary Science, 81(3), 340–344. https://doi.org/10.1016/j.rvsc.2006.03.006

de Mesquita Souza Saraiva, M., Lim, K., do Monte, D. F. M., Givisiez, P. E. N., Alves, L. B. R., de Freitas Neto, O. C., Kariuki, S., Júnior, A. B., de Oliveira, C. J. B., & Gebreyes, W. A. (2022). Antimicrobial resistance in the globalized food chain: A One Health perspective applied to the poultry industry. Brazilian Journal of Microbiology, 53(1), 465–486. https://doi.org/10.1007/s42770-021-00635-8

Griggs, D. J., Hall, M. C., Jin, Y. F., & Piddock, L. J. V. (1994). Quinolone resistance in veterinary isolates of Salmonella. Journal of Antimicrobial Chemotherapy, 33(6), 1173–1189. https://doi.org/10.1093/jac/33.6.1173

Hendriksen, R. S., Vieira, A. R., Karlsmose, S., Lo Fo Wong, D. M. A., Jensen, A. B., Wegener, H. C., & Aarestrup, F. M. (2011). Global monitoring of Salmonella serovar distribution from the WHO Global Foodborne Infections Network. Foodborne Pathogens and Disease, 8(8), 887–900. https://doi.org/10.1089/fpd.2010.0787

Krüger, G. I., Urbina, F., Pardo-Esté, C., Salinas, V., Álvarez, J., Avilés, N., Oviedo, A., Kusch, C., Pavez, V., Vernal, R., & Tello, M. (2025). Resilient by design: Environmental stress promotes biofilm formation and multi-resistance in poultry-associated Salmonella. Microorganisms, 13(8), 1812. https://doi.org/10.3390/microorganisms13081812

Magiorakos, A.-P., Srinivasan, A., Carey, R. B., Carmeli, Y., Falagas, M. E., Giske, C. G., Harbarth, S., Hindler, J. F., Kahlmeter, G., Olsson-Liljequist, B., Paterson, D. L., Rice, L. B., Stelling, J., Struelens, M. J., Vatopoulos, A., Weber, J. T., & Monnet, D. L. (2012). Multidrug-resistant, extensively drug-resistant and pandrug-resistant bacteria: Interim standard definitions. Clinical Microbiology and Infection, 18(3), 268–281. https://doi.org/10.1111/j.1469-0691.2011.03570.x

Mahindroo, J., Thanh, D. P., Nguyen, T. N. T., Mohan, B., Thakur, S., Baker, S., & Taneja, N. (2019). Endemic fluoroquinolone-resistant Salmonella enterica serovar Kentucky ST198 in northern India. Microbial Genomics, 5(6), e000275. https://doi.org/10.1099/mgen.0.000275

Majowicz, S. E., Musto, J., Scallan, E., Angulo, F. J., Kirk, M., O’Brien, S. J., Jones, T. F., Fazil, A., & Hoekstra, R. M. (2010). The global burden of nontyphoidal Salmonella gastroenteritis. Clinical Infectious Diseases, 50(6), 882–889. https://doi.org/10.1086/650733

Malorny, B., Hoorfar, J., Bunge, C., & Helmuth, R. (2003). Multicenter validation of Salmonella PCR. Applied and Environmental Microbiology, 69(1), 290–296. https://doi.org/10.1128/AEM.69.1.290-296.2003

Pathak, V., Tiwari, R., & Awasthi, M. G. (2026). Food safety challenges in poultry meat production: From farm to processing. MOJ Food Processing and Technology, 14(1), 13–16.

Pooja Sajish, V., Uzzaman, N., Aramvalarthan, N., & Asaduzzaman, M. (2025). Prevalence, distribution, and antimicrobial resistance profiles in poultry meat samples from India: A systematic review. Frontiers in Veterinary Science, 12, 1672628. https://doi.org/10.3389/fvets.2025.1672628

Robicsek, A., Strahilevitz, J., Jacoby, G. A., Macielag, M., Abbanat, D., Park, C. H., Bush, K., & Hooper, D. C. (2006). Fluoroquinolone-modifying enzyme: A new adaptation of a common aminoglycoside acetyltransferase. Nature Medicine, 12(1), 83–88. https://doi.org/10.1038/nm1347

Rodríguez-Campos, D., Machuca, J., Cienfuegos-Martínez, S., & Rodríguez-Martínez, J. M. (2023). Salmonella biofilm formation under fluidic shear stress. Foods, 12(9), 1918. https://doi.org/10.3390/foods12091918

Samanta, I., Joardar, S. N., Das, P. K., Sar, T. K., Bandyopadhyay, S., Dutta, T. K., & Sarkar, U. (2014). Prevalence and antibiotic resistance profiles of Salmonella serotypes in backyard poultry. Journal of Applied Poultry Research, 23(3), 536–545. https://doi.org/10.3382/japr.2013-00929

Sharma, C., Rokana, N., Chandra, M., Singh, B. P., Gulhane, R. D., Gill, J. P. S., & Puniya, A. K. (2018). Antimicrobial resistance: Surveillance and alternative strategies in dairy animals. Frontiers in Veterinary Science, 4, 237. https://doi.org/10.3389/fvets.2017.00237

Stepanović, S., Vuković, D., Dakić, I., Savić, B., & Švabić-Vlahović, M. (2000). A modified microtiter-plate test for quantification of staphylococcal biofilm formation. Journal of Microbiological Methods, 40(2), 175–179. https://doi.org/10.1016/S0167-7012(00)00122-6

Van Boeckel, T. P., Brower, C., Gilbert, M., Grenfell, B. T., Levin, S. A., Robinson, T. P., Teillant, A., & Laxminarayan, R. (2015). Global trends in antimicrobial use in food animals. Proceedings of the National Academy of Sciences, 112(18), 5649–5654. https://doi.org/10.1073/pnas.1503141112

World Health Organization. (2024). WHO medically important antimicrobials list for human medicine. World Health Organization.

Published

2026-05-23

How to Cite

Prevalence, Molecular Characterization, and Antibiotic Resistance  Profiling of Poultry-Associated Salmonella Isolates from Four Distinct  Geographical Zones of West Bengal, India. (2026). Advances in Applied Biological Research, 3(2), 20-32. https://doi.org/10.48165/aabr.32026.3.2.03